{
  "_id": "6adb324e1206290b6ab76676",
  "Package": "twoPhaseSens",
  "Title": "Sensitivity Analysis for Covariates Observed in Two-Phase\nSamples",
  "Version": "0.1.0",
  "Authors@R": "c(person(\"Rophence\", \"Ojiambo\", email = \"rophence.ojiambo@nyu.edu\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6798-9066\")), person(\"Jemar\", \"Bather\", email = \"jemar.bather@nyu.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-0285-3678\")))",
  "Description": "Provides a structured method-comparison\nsensitivity-analysis workflow for linear regression when\nimportant continuous adjustment covariates are observed only in\na Phase-2 subsample. Implements naive analysis, complete-case\nanalysis, fully conditional specification multiple imputation,\njoint-model multiple imputation, inverse probability weighting,\nand augmented inverse probability weighting, with standardized\ntables, diagnostics, and publication-style forest plots.\nMethodological background is provided by Little and Rubin\n(2019) <doi:10.1002/9781119482260> for general missing-data\nmethods, White and Carlin (2010) <doi:10.1002/sim.3944> for\ncomplete-case analysis with missing covariates, White, Royston\nand Wood (2011) <doi:10.1002/sim.4067> and van Buuren and\nGroothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03> for\nchained-equations multiple imputation, Quartagno, Grund and\nCarpenter (2019) <doi:10.32614/RJ-2019-028> for joint-model\nmultiple imputation, Robins, Rotnitzky and Zhao (1994)\n<doi:10.1080/01621459.1994.10476818> for inverse-probability\nweighting with missing regressors, and Bang and Robins (2005)\n<doi:10.1111/j.1541-0420.2005.00377.x> for doubly robust\nestimation.",
  "License": "MIT + file LICENSE",
  "URL": "https://rophenceojiambo.github.io/twoPhaseSens/,\nhttps://github.com/rophenceojiambo/twoPhaseSens",
  "BugReports": "https://github.com/rophenceojiambo/twoPhaseSens/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nlibssl-dev libnode-dev libx11-dev zlib1g-dev",
  "Repository": "https://rophenceojiambo.r-universe.dev",
  "Date/Publication": "2026-10-14 14:08:40 UTC",
  "RemoteUrl": "https://github.com/rophenceojiambo/twophasesens",
  "RemoteRef": "HEAD",
  "RemoteSha": "728dd0e361302d4a6ec809b5268b69613751ce0f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-23 10:04:46 UTC",
    "User": "root"
  },
  "Author": "Rophence Ojiambo [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6798-9066>),\nJemar Bather [aut] (ORCID: <https://orcid.org/0000-0002-0285-3678>)",
  "Maintainer": "Rophence Ojiambo <rophence.ojiambo@nyu.edu>",
  "_user": "rophenceojiambo",
  "_type": "src",
  "_file": "twoPhaseSens_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e9828f7891df861dfa2388178c564af41837ebe65cb337e0faee36689c2b8e83",
  "_filesize": 405416,
  "_sha256": "e9828f7891df861dfa2388178c564af41837ebe65cb337e0faee36689c2b8e83",
  "_expires": "2027-01-31T10:09:17.000Z",
  "_created": "2026-10-23T10:04:46.000Z",
  "_published": "2026-10-23T10:09:18.842Z",
  "_upstream": "https://github.com/rophenceojiambo/twophasesens",
  "_status": "success",
  "_maintainer": {
    "name": "Rophence Ojiambo",
    "email": "rophence.ojiambo@nyu.edu",
    "login": "rophenceojiambo",
    "orcid": "0000-0002-6798-9066",
    "description": "",
    "uuid": 95448916
  },
  "_jobs": [
    {
      "job": 120357369260,
      "time": 158,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12494121758"
    },
    {
      "job": 120357369278,
      "time": 175,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12493423317"
    },
    {
      "job": 120357369274,
      "time": 150,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12493283608"
    },
    {
      "job": 120357369647,
      "time": 238,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12494406695"
    },
    {
      "job": 120354432625,
      "time": 432,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12494271664"
    },
    {
      "job": 120357369294,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12493961848"
    },
    {
      "job": 120357369368,
      "time": 93,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12493518790"
    },
    {
      "job": 120357369359,
      "time": 88,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12494181405"
    },
    {
      "job": 120357369347,
      "time": 96,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12494390877"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563",
  "_commit": {
    "id": "728dd0e361302d4a6ec809b5268b69613751ce0f",
    "author": "Rophence Ojiambo <rophence.ojiambo@nyu.edu>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #33 from rophenceojiambo/cran/vignette-width-references\n\nRestore readable vignette output while preserving user options",
    "time": 1791986920
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "gtsummary",
      "version": ">= 2.0.0",
      "role": "Imports"
    },
    {
      "package": "jomo",
      "role": "Imports"
    },
    {
      "package": "mice",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "rophenceojiambo",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-40",
      "n": 107
    },
    {
      "week": "2026-42",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "rophenceojiambo",
      "count": 194,
      "uuid": 95448916
    }
  ],
  "_userbio": {
    "uuid": 95448916,
    "type": "user",
    "name": "Rophence Ojiambo",
    "followers": 0
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/twoPhaseSens"
  },
  "_devurl": "https://github.com/rophenceojiambo/twophasesens",
  "_pkgdown": "https://rophenceojiambo.github.io/twoPhaseSens/",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/twoPhaseSens.html",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/rophenceojiambo/twophasesens",
  "_realowner": "rophenceojiambo",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-10-22"
    }
  ],
  "_exports": [
    "diagnostics",
    "plot_sensitivity",
    "tbl_sensitivity",
    "twophase_example_data",
    "twophase_sensitivity"
  ],
  "_help": [
    {
      "page": "diagnostics",
      "title": "Extract diagnostics from a twoPhaseSens analysis",
      "topics": [
        "diagnostics",
        "diagnostics.twophase_sensitivity"
      ]
    },
    {
      "page": "plot_sensitivity",
      "title": "Plot sensitivity-analysis estimates and confidence intervals",
      "topics": [
        "plot.twophase_sensitivity",
        "plot_sensitivity"
      ]
    },
    {
      "page": "tbl_sensitivity",
      "title": "Create a publication-ready sensitivity-analysis table",
      "topics": [
        "tbl_sensitivity"
      ]
    },
    {
      "page": "twophase_example_data",
      "title": "Generate a synthetic two-phase example dataset",
      "topics": [
        "twophase_example_data"
      ]
    },
    {
      "page": "twophase_sensitivity",
      "title": "Compare methods for Phase-2 covariates missing by design",
      "topics": [
        "twophase_sensitivity"
      ]
    }
  ],
  "_readme": "https://github.com/rophenceojiambo/twophasesens/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "base64enc",
    "bigD",
    "bit",
    "bit64",
    "bitops",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "cards",
    "cardx",
    "cli",
    "clipr",
    "codetools",
    "commonmark",
    "cpp11",
    "crayon",
    "curl",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "foreach",
    "fs",
    "generics",
    "ggplot2",
    "glmnet",
    "glue",
    "gt",
    "gtable",
    "gtsummary",
    "haven",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "isoband",
    "iterators",
    "jomo",
    "jquerylib",
    "jsonlite",
    "juicyjuice",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "litedown",
    "lme4",
    "magrittr",
    "markdown",
    "MASS",
    "Matrix",
    "memoise",
    "mice",
    "mime",
    "minqa",
    "mitml",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "ordinal",
    "pan",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reactable",
    "reactR",
    "readr",
    "reformulas",
    "rlang",
    "rmarkdown",
    "rpart",
    "S7",
    "sass",
    "scales",
    "shape",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "tzdb",
    "ucminf",
    "utf8",
    "V8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting started with twoPhaseSens",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Example data",
        "Run a one-outcome analysis",
        "Create the sensitivity-analysis table",
        "Customize displayed precision",
        "Run multiple outcomes",
        "Supply explicit outcome-specific seeds",
        "Choose which methods to run",
        "Control multiple-imputation settings",
        "Change the confidence level",
        "Inspect diagnostics",
        "Plot the sensitivity analysis",
        "Relabel methods and outcomes",
        "What the package currently assumes",
        "Interpreting the comparison table",
        "Methodological references",
        "Reproducibility"
      ],
      "created": "2026-09-28 05:41:09",
      "modified": "2026-10-14 14:08:40",
      "commits": 12
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "twophasesens",
  "_universes": [
    "rophenceojiambo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-23T10:07:20.000Z",
      "distro": "resolute",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/c7c61ad415b453895ff23da311b4d26398491728f6ffce5d8f2706a52d79248a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-23T10:07:35.000Z",
      "distro": "resolute",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/10cfdb05f2559c582cd6519f303dfd17a4d3aad1e8eb57e52bc6b25536a33203",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-23T10:06:56.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/69df1476b965d574d2441db679d380530c8fd414b57aca1906e885be48158cec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-23T10:07:28.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/9575591199010beef514836b2282575fd6a50b389ef56e16f9d2d8f6b1e2fc03",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-23T10:07:06.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/7ed59ab5a58264c1413458c5e14df877a2009b2374e84e617bb6f4ccf52c4ab6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-23T10:06:00.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/5cd974edc682e6bfdf34a96be1fdfb9ab844c091db6a207fc5765c80d399ab07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-23T10:06:03.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/c844550d07c74ce4f62073e08f1403bc54774f3ce2388f86a8e69a5561de1a97",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-23T10:06:06.000Z",
      "commit": "728dd0e361302d4a6ec809b5268b69613751ce0f",
      "fileid": "https://r2.ropensci.org/571087ebb41cc97b43a997e5d54f86fd6b0192737d3c474817a78313e0b81203",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rophenceojiambo/actions/runs/39935618563"
    }
  ]
}